MolNFT v1 · #8446 · protein
Structure of a cold-adapted family 8 xylanase
1H12 · Endo-1,4-beta-xylanase: “Structure of a cold-adapted family 8 xylanase”. X-ray diffraction, 2 ligands (XYP, XYS), 1 pocket (best druggability 0.68). MolNFT v1 #8446 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1H12
- Type
- protein
- Length
- 404 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- UniProt
- Q8RJN8
- Ligands
- XYP, XYS
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 404 | 48% helix, 12% strand | Q8RJN8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.68 | 0.78 | 42 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1H12 · Structure of a cold-adapted family 8 xylanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RJN8
- Elsewhere: RCSB PDB 1H12 · PDBe 1H12 · UniProt Q8RJN8
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