MolNFT v1 · #84328 · protein
Gamma 2 adaptin ear domain crystal structure with PRES1 SITE1 peptide npdwdfn
3ZHF · Ap-1 complex subunit gamma-like 2: “Gamma 2 adaptin ear domain crystal structure with PRES1 SITE1 peptide npdwdfn”. X-ray diffraction, 1 ligand (NH2). MolNFT v1 #84328 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3ZHF
- Type
- protein
- Length
- 129 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ap-1 complex subunit gamma-like 2; Large envelope protein
- UniProt
- O75843, Q67953
- Ligands
- NH2
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ap-1 complex subunit gamma-like 2 | protein | 123 | 2% helix, 50% strand | O75843 |
| B | Large envelope protein | protein | 6 | 0% helix, 0% strand | Q67953 |
Ligands and binding sites
- NH2 · Amino group · ion · chains B
- PEG · Di(hydroxyethyl)ether · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 464 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3ZHF · gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN · the same entry in another collection · chain A against A, TM-score 1.00
- O75843 · AlphaFold monomer V2.0 prediction for ap-1 complex subunit gamma-like 2 (O75843) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75843
- Every structure of UniProt Q67953
- Elsewhere: RCSB PDB 3ZHF · PDBe 3ZHF · UniProt O75843 · UniProt Q67953
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