MolNFT v1 · #83959 · protein

Structure of S. aureus undecaprenyl diphosphate synthase

3WYI · Isoprenyl transferase: “Structure of S. aureus undecaprenyl diphosphate synthase”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.69). MolNFT v1 #83959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3WYI
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Isoprenyl transferase
EC: 2.5.1.-
UniProt: W8UYA6
Ligands: MG
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Isoprenyl transferase (EC 2.5.1.-)	protein	231	45% helix, 14% strand	W8UYA6

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.69	0.98	22	empty

Compared structures

3WYI · Structure of S. aureus undecaprenyl diphosphate synthase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8UYA6
Elsewhere: RCSB PDB 3WYI · PDBe 3WYI · UniProt W8UYA6

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