MolNFT v1 · #83911 · protein
Crystal structure of D-stereospecific amidohydrolase from streptomyces sp. 82F2
3WWX · S12 family peptidase: “Crystal structure of D-stereospecific amidohydrolase from streptomyces sp. 82F2”. X-ray diffraction, 1 ligand (DIA), 2 pockets (best druggability 0.56). MolNFT v1 #83911 on GenesisL1: 3D structure, binding…
- PDB
- 3WWX
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S12 family peptidase
- UniProt
- E2RVJ1
- Ligands
- DIA
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S12 family peptidase | protein | 340 | 36% helix, 17% strand | E2RVJ1 |
Ligands and binding sites
- DIA · Octane 1,8-diamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 296 | 0.56 | 0.76 | 48 | DIA |
| 2 | 132 | 0.46 | 0.78 | 27 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3WWX · Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2RVJ1
- Elsewhere: RCSB PDB 3WWX · PDBe 3WWX · UniProt E2RVJ1
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