MolNFT v1 · #83887 · protein
Crystal structure of the computationally designed PIZZA2 protein
3WW7: “Crystal structure of the computationally designed PIZZA2 protein”. X-ray diffraction, 1 pocket (best druggability 0.70). MolNFT v1 #83887 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3WW7
- Type
- protein
- Length
- 246 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PIZZA2 protein
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | PIZZA2 protein | protein | 82 | 7% helix, 39% strand | — |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 375 | 0.70 | 0.82 | 42 | empty |
Interfaces
3 interfaces between chains.
- A–C · 827 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 822 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 819 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3WW7 · Crystal structure of the computationally designed Pizza2 protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3WW7 · PDBe 3WW7
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