MolNFT v1 · #83735 · protein
Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique ZN2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
3WRN · Non-capsid protein ns-1: “Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique ZN2+ coordination in…”. X-ray diffraction, 2 ligands (NA, ZN), 1 pocket (best druggability 0.38). MolNFT v1 #83735 on…
- PDB
- 3WRN
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-capsid protein ns-1
- UniProt
- P03134
- Ligands
- NA, ZN
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-capsid protein ns-1 | protein | 248 | 45% helix, 19% strand | P03134 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.38 | 0.79 | 15 | empty |
Compared structures
- 3WRN · Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03134
- Elsewhere: RCSB PDB 3WRN · PDBe 3WRN · UniProt P03134
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