MolNFT v1 · #83564 · protein
Human ppar gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75
3WMH · Peroxisome proliferator-activated receptor gamma: “Human ppar gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75”. X-ray diffraction, 1 ligand (JJA), 6 pockets (best druggability 0.84).…
- PDB
- 3WMH
- Type
- protein
- Length
- 520 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisome proliferator-activated receptor gamma
- UniProt
- P37231
- Ligands
- JJA
- Pockets
- 6 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisome proliferator-activated receptor gamma | protein | 264 | 66% helix, 5% strand | P37231 |
| B | Peroxisome proliferator-activated receptor gamma | protein | 256 | 68% helix, 5% strand | P37231 |
Ligands and binding sites
- JJA · N-(phenylsulfonyl)-4-propoxy-3-({[4-(pyrimidin-2-yl)benzoyl]amino}methyl)benzamide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 411 | 0.84 | 0.92 | 51 | JJA |
| 2 | 610 | 0.81 | 0.86 | 73 | JJA |
| 3 | 461 | 0.63 | 0.77 | 40 | empty |
| 4 | 112 | 0.57 | 0.85 | 23 | empty |
| 5 | 81 | 0.52 | 0.85 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 929 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 3WMH · Human PPAR gamma ligand binding domain in complex with a gammma selective synthetic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Elsewhere: RCSB PDB 3WMH · PDBe 3WMH · UniProt P37231
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