MolNFT v1 · #83517 · protein
Copper-containing nitrite reductase from geobacillus thermodenitrificans in complex with formate
3WKQ: “Copper-containing nitrite reductase from geobacillus thermodenitrificans in complex with formate”. X-ray diffraction, 3 ligands (CU, NA, SO4). MolNFT v1 #83517 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3WKQ
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrite reductase
- UniProt
- A4IL26
- Ligands
- CU, NA, SO4
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrite reductase | protein | 299 | 10% helix, 47% strand | A4IL26 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 6 copies · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
- FMT · Formic acid · additive · 9 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3WKQ · Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4IL26
- Elsewhere: RCSB PDB 3WKQ · PDBe 3WKQ · UniProt A4IL26
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