MolNFT v1 · #83144 · protein
Crystal structure analysis of the synthetic GCN4 thioester coiled coil peptide
3W92: “Crystal structure analysis of the synthetic GCN4 thioester coiled coil peptide”. X-ray diffraction, 2 ligands (TYZ, MCR). MolNFT v1 #83144 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3W92
- Type
- protein
- Length
- 93 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioester coiled coil peptide
- Ligands
- TYZ, MCR
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Thioester coiled coil peptide | protein | 31 | 81% helix, 0% strand | — |
Ligands and binding sites
- TYZ · Para acetamido benzoic acid · ligand · 5 copies · chains A, B, C
- MCR · Sulfanylacetic acid · ligand · 3 copies · chains A, B, C
- ACT · Acetate ion · additive · 2 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–C · 710 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 693 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 640 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 11 covalent (covalent ligand).
Compared structures
- 3W92 · Crystal Structure Analysis of the synthetic GCN4 Thioester coiled coil peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3W92 · PDBe 3W92
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