MolNFT v1 · #83025 · protein

Crystal structure of nfeob from gallionella capsiferriformans

3W5I · Ferrous iron transport protein B: “Crystal structure of nfeob from gallionella capsiferriformans”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.60). MolNFT v1 #83025 on GenesisL1: 3D structure, binding sites and…

PDB: 3W5I
Type: protein
Length: 391 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferrous iron transport protein B
UniProt: D9SIP4
Ligands: SO4
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ferrous iron transport protein B	protein	194	44% helix, 25% strand	D9SIP4
B	Ferrous iron transport protein B	protein	197	44% helix, 23% strand	D9SIP4

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.60	0.84	20	empty
2	51	0.50	0.86	15	empty
3	165	0.44	0.74	34	empty

Interfaces

1 interface between chains.

A–B · 1604 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

3W5I · Crystal structure of NfeoB from Gallionella capsiferriformans · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D9SIP4
Elsewhere: RCSB PDB 3W5I · PDBe 3W5I · UniProt D9SIP4

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