MolNFT v1 · #83010 · protein

Crystal structure of psychrophilic beta-glucosidase bglu from micrococcus antarcticus

3W53: “Crystal structure of psychrophilic beta-glucosidase bglu from micrococcus antarcticus”. X-ray diffraction, 1 pocket (best druggability 0.81). MolNFT v1 #83010 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3W53
Type: protein
Length: 469 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase
EC: 3.2.1.21
UniProt: B9V8P5
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucosidase (EC 3.2.1.21)	protein	469	42% helix, 15% strand	B9V8P5

Ligands and binding sites

TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	742	0.81	0.84	53	TRS

Compared structures

3W53 · Crystal structure of psychrophilic beta-glucosidase BglU from Micrococcus antarcticus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9V8P5
Elsewhere: RCSB PDB 3W53 · PDBe 3W53 · UniProt B9V8P5

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