MolNFT v1 · #82931 · protein

The high-resolution crystal structure of tsxyla, intracellular xylanase from /thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylobiose

3W25 · Glycoside hydrolase family 10: “The high-resolution crystal structure of tsxyla, intracellular xylanase from /thermoanaerobacterium…”. X-ray diffraction, 1 ligand (XYP), 1 pocket (best druggability 0.32). MolNFT v1 #82931 on…

PDB: 3W25
Type: protein
Length: 324 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycoside hydrolase family 10
EC: 3.2.1.8
UniProt: I3VVC1
Ligands: XYP
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycoside hydrolase family 10 (EC 3.2.1.8)	protein	324	41% helix, 20% strand	I3VVC1

Ligands and binding sites

XYP · beta-D-xylopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.32	0.77	17	XYP

Compared structures

3W25 · The high-resolution crystal structure of TsXylA, intracellular xylanase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I3VVC1
Elsewhere: RCSB PDB 3W25 · PDBe 3W25 · UniProt I3VVC1

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