MolNFT v1 · #82801 · protein
W32Y mutant of FMN-binding protein from desulfovibrio vulgaris (miyazaki F)
3VYA: “W32Y mutant of FMN-binding protein from desulfovibrio vulgaris (miyazaki F)”. X-ray diffraction, 1 ligand (FMN). MolNFT v1 #82801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VYA
- Type
- protein
- Length
- 120 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FMN-binding protein
- UniProt
- Q46604
- Ligands
- FMN
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | FMN-binding protein | protein | 120 | 21% helix, 49% strand | Q46604 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3VYA · W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) · the same entry in another collection · chain A against A, TM-score 1.00
- Q46604 · AlphaFold monomer V2.0 prediction for FMN-binding protein (Q46604) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q46604
- Elsewhere: RCSB PDB 3VYA · PDBe 3VYA · UniProt Q46604
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