MolNFT v1 · #82799 · protein

Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group P63

3VY8 · Outer membrane protein: “Crystal structure of porb from neisseria meningitidis in complex with cesium ion, space group P63”. X-ray diffraction, 1 ligand (CS), 4 pockets (best druggability 0.69). MolNFT v1 #82799 on GenesisL1: 3D…

PDB: 3VY8
Type: protein
Length: 341 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein
Ligands: CS
Pockets: 4 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Outer membrane protein	protein	341	6% helix, 59% strand	—

Ligands and binding sites

CS · Cesium ion · metal · 3 copies · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	851	0.69	0.76	83	CS
2	124	0.65	0.88	24	empty
3	205	0.46	0.74	33	empty
4	118	0.38	0.74	18	empty

Compared structures

3VY8 · Crystal Structure of PorB from Neisseria meningitidis in complex with Cesium ion, space… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3VY8 · PDBe 3VY8

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