MolNFT v1 · #82758 · protein

Crystal structure of peptidoglycan hydrolase mutant from sphingomonas sp. A1

3VWO · Peptidoglycan hydrolase flgj: “Crystal structure of peptidoglycan hydrolase mutant from sphingomonas sp. A1”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #82758 on GenesisL1: 3D structure, binding sites and…

PDB: 3VWO
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidoglycan hydrolase flgj
UniProt: B7XH69
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidoglycan hydrolase flgj	protein	155	49% helix, 15% strand	B7XH69

Ligands and binding sites

EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.56	0.76	27	EPE

Compared structures

3VWO · Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7XH69
Elsewhere: RCSB PDB 3VWO · PDBe 3VWO · UniProt B7XH69

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