MolNFT v1 · #82715 · protein

Crystal structure of capsular polysaccharide synthesizing enzyme cape , K126E, in apo form

3VVC · Capsular polysaccharide synthesis enzyme CAP8E: “Crystal structure of capsular polysaccharide synthesizing enzyme cape , K126E, in apo form”. X-ray diffraction, 2 ligands (NAP, SO4), 4 pockets (best druggability 0.75). MolNFT v1…

PDB: 3VVC
Type: protein
Length: 318 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsular polysaccharide synthesis enzyme CAP8E
UniProt: Q7A2Y4
Ligands: NAP, SO4
Pockets: 4 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsular polysaccharide synthesis enzyme CAP8E	protein	318	43% helix, 20% strand	Q7A2Y4

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	683	0.75	0.81	67	NAP
2	114	0.45	0.78	19	empty
3	144	0.44	0.76	20	SO4
4	65	0.37	0.79	13	empty

Compared structures

3VVC · Crystal Structure of Capsular Polysaccharide Synthesizing Enzyme CapE , K126E, in apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7A2Y4
Elsewhere: RCSB PDB 3VVC · PDBe 3VVC · UniProt Q7A2Y4

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