MolNFT v1 · #82625 · protein

Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with fructose

3VSS: “Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with fructose”. X-ray diffraction, 1 ligand (FRU), 4 pockets (best druggability 0.66). MolNFT v1 #82625 on GenesisL1: 3D structure, binding sites…

PDB: 3VSS
Type: protein
Length: 494 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-fructofuranosidase
EC: 3.2.1.26
UniProt: Q8VW87
Ligands: FRU
Pockets: 4 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-fructofuranosidase (EC 3.2.1.26)	protein	494	9% helix, 40% strand	Q8VW87

Ligands and binding sites

FRU · beta-D-fructofuranose · sugar · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	451	0.66	0.78	49	FRU
2	84	0.33	0.74	20	empty
3	67	0.28	0.73	18	empty
4	54	0.27	0.73	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3VSS · Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VW87
Elsewhere: RCSB PDB 3VSS · PDBe 3VSS · UniProt Q8VW87

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