MolNFT v1 · #82624 · protein
Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain
3VSR: “Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #82624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VSR
- Type
- protein
- Length
- 493 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-fructofuranosidase
- EC
- 3.2.1.26
- UniProt
- Q8VW87
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-fructofuranosidase (EC 3.2.1.26) | protein | 493 | 8% helix, 42% strand | Q8VW87 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 418 | 0.65 | 0.78 | 43 | empty |
| 2 | 66 | 0.33 | 0.76 | 18 | empty |
| 3 | 78 | 0.33 | 0.74 | 20 | empty |
| 4 | 77 | 0.29 | 0.72 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3VSR · Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VW87
- Elsewhere: RCSB PDB 3VSR · PDBe 3VSR · UniProt Q8VW87
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