MolNFT v1 · #82530 · protein
Crystal structure of glucokinase from antarctic psychrotroph at 1.69A
3VPZ: “Crystal structure of glucokinase from antarctic psychrotroph at 1.69A”. X-ray diffraction, 2 pockets (best druggability 0.53). MolNFT v1 #82530 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VPZ
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucokinase
- EC
- 2.7.1.2
- UniProt
- H7CHS4
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucokinase (EC 2.7.1.2) | protein | 322 | 43% helix, 25% strand | H7CHS4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.53 | 0.75 | 44 | empty |
| 2 | 126 | 0.40 | 0.75 | 26 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3VPZ · Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H7CHS4
- Elsewhere: RCSB PDB 3VPZ · PDBe 3VPZ · UniProt H7CHS4
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