MolNFT v1 · #82515 · protein

Crystal structure of type VI effector TSE1 from pseudomonas aeruginosa

3VPI · Type VI secretion exported 1: “Crystal structure of type VI effector TSE1 from pseudomonas aeruginosa”. X-ray diffraction, 1 pocket (best druggability 0.28). MolNFT v1 #82515 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3VPI
Type: protein
Length: 152 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type VI secretion exported 1
UniProt: Q9I2Q1
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Type VI secretion exported 1	protein	152	35% helix, 20% strand	Q9I2Q1

Ligands and binding sites

FMT · Formic acid · additive · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.28	0.74	15	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3VPI · Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Q9I2Q1 · AlphaFold monomer V2.0 prediction for peptidoglycan amidase TSE1 (Q9I2Q1) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I2Q1
Elsewhere: RCSB PDB 3VPI · PDBe 3VPI · UniProt Q9I2Q1

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