MolNFT v1 · #82442 · protein
Crystal structure of tip-alpha N25 from helicobacter pylori in its natural dimeric form
3VNC: “Crystal structure of tip-alpha N25 from helicobacter pylori in its natural dimeric form”. X-ray diffraction, 3 pockets (best druggability 0.67). MolNFT v1 #82442 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VNC
- Type
- protein
- Length
- 295 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tip-alpha
- UniProt
- O25318
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tip-alpha | protein | 148 | 51% helix, 21% strand | O25318 |
| B | Tip-alpha | protein | 147 | 50% helix, 21% strand | O25318 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.67 | 0.92 | 14 | empty |
| 2 | 156 | 0.41 | 0.74 | 28 | empty |
| 3 | 125 | 0.38 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1070 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 3VNC · Crystal Structure of TIP-alpha N25 from Helicobacter Pylori in its natural dimeric form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25318
- Elsewhere: RCSB PDB 3VNC · PDBe 3VNC · UniProt O25318
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