MolNFT v1 · #82430 · protein
Crystal structure of pectate lyase BSP165PELA from bacillus sp. N165 in complex with trigalacturonate
3VMW: “Crystal structure of pectate lyase BSP165PELA from bacillus sp. N165 in complex with trigalacturonate”. X-ray diffraction, 2 ligands (ADA, SO4). MolNFT v1 #82430 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VMW
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pectate lyase
- EC
- 4.2.2.2
- UniProt
- D0VP31
- Ligands
- ADA, SO4
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pectate lyase (EC 4.2.2.2) | protein | 324 | 9% helix, 41% strand | D0VP31 |
Ligands and binding sites
- ADA · alpha-D-galactopyranuronic acid · sugar · 3 copies · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 3VMW · Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VP31
- Elsewhere: RCSB PDB 3VMW · PDBe 3VMW · UniProt D0VP31
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