MolNFT v1 · #82407 · protein

Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen

3VM4 · Fatty acid alpha-hydroxylase: “Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen”. X-ray diffraction, 2 ligands (HEM, IZP), 3 pockets (best druggability 0.85). MolNFT v1 #82407 on GenesisL1: 3D structure, binding…

PDB: 3VM4
Type: protein
Length: 407 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fatty acid alpha-hydroxylase
EC: 1.11.2.4
UniProt: O24782
Ligands: HEM, IZP
Pockets: 3 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fatty acid alpha-hydroxylase (EC 1.11.2.4)	protein	407	52% helix, 12% strand	O24782

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
IZP · (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid · ligand · chains A
MRD · (4R)-2-methylpentane-2,4-diol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	965	0.85	0.86	69	HEM, IZP
2	92	0.33	0.73	17	empty
3	74	0.32	0.75	17	empty

Compared structures

3VM4 · Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O24782
Elsewhere: RCSB PDB 3VM4 · PDBe 3VM4 · UniProt O24782

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