MolNFT v1 · #82350 · protein
Crystal structure of a phosphotyrosine binding domain
3VK6 · E3 ubiquitin-protein ligase hakai: “Crystal structure of a phosphotyrosine binding domain”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.51). MolNFT v1 #82350 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3VK6
- Type
- protein
- Length
- 96 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase hakai
- EC
- 6.3.2.-
- UniProt
- Q9JIY2
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase hakai (EC 6.3.2.-) | protein | 96 | 24% helix, 20% strand | Q9JIY2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.51 | 0.77 | 42 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JIY2
- Elsewhere: RCSB PDB 3VK6 · PDBe 3VK6 · UniProt Q9JIY2
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