MolNFT v1 · #82332 · protein
Crystal structure analysis of the P9-1
3VJJ: “Crystal structure analysis of the P9-1”. X-ray diffraction, 10 pockets (best druggability 0.50). MolNFT v1 #82332 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VJJ
- Type
- protein
- Length
- 547 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P9-1
- UniProt
- Q913E4
- Pockets
- 10 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P9-1 | protein | 277 | 39% helix, 11% strand | Q913E4 |
| B | P9-1 | protein | 270 | 39% helix, 10% strand | Q913E4 |
Pockets
10 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.50 | 0.77 | 28 | empty |
| 2 | 158 | 0.48 | 0.77 | 30 | empty |
| 3 | 86 | 0.42 | 0.79 | 15 | empty |
| 4 | 78 | 0.36 | 0.76 | 13 | empty |
| 5 | 77 | 0.33 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 780 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3VJJ · Crystal Structure Analysis of the P9-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q913E4
- Elsewhere: RCSB PDB 3VJJ · PDBe 3VJJ · UniProt Q913E4
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