MolNFT v1 · #82316 · protein
Crystal strcture of SWI5 from fission yeast
3VIR · Mating-type switching protein SWI5: “Crystal strcture of SWI5 from fission yeast”. X-ray diffraction, 3 pockets (best druggability 0.43). MolNFT v1 #82316 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3VIR
- Type
- protein
- Length
- 251 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mating-type switching protein SWI5
- UniProt
- Q9UUB7
- Pockets
- 3 · best druggability 0.43
Structure
x-ray diffraction · 4 distinct chains · 95% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mating-type switching protein SWI5 | protein | 69 | 96% helix, 0% strand | Q9UUB7 |
| B | Mating-type switching protein SWI5 | protein | 66 | 97% helix, 0% strand | Q9UUB7 |
| C | Mating-type switching protein SWI5 | protein | 53 | 96% helix, 0% strand | Q9UUB7 |
| D | Mating-type switching protein SWI5 | protein | 63 | 92% helix, 0% strand | Q9UUB7 |
Ligands and binding sites
- BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.43 | 0.75 | 20 | empty |
| 2 | 61 | 0.38 | 0.79 | 13 | empty |
| 3 | 96 | 0.35 | 0.74 | 18 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1026 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 883 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 525 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 489 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 221 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UUB7
- Elsewhere: RCSB PDB 3VIR · PDBe 3VIR · UniProt Q9UUB7
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