MolNFT v1 · #8230 · protein

Mopii from clostridium pasteurianum (APO1)

1GUS · Molybdate binding protein II: “Mopii from clostridium pasteurianum (APO1)”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #8230 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GUS
Type: protein
Length: 402 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Molybdate binding protein II
UniProt: P08854
Ligands: MG, CL

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	Molybdate binding protein II	protein	67	18% helix, 55% strand	P08854

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A, B, C, D, E, F
CL · Chloride ion · ion · 3 copies · chains D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

15 interfaces between chains.

B–F · 1524 Å² buried · 18 hydrogen bonds · protein-protein
A–D · 1517 Å² buried · 18 hydrogen bonds · protein-protein
C–E · 1511 Å² buried · 18 hydrogen bonds · protein-protein
A–E · 637 Å² buried · 11 hydrogen bonds · protein-protein
C–F · 635 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

1GUS · MopII from Clostridium pasteurianum (apo1) · the same entry in another collection · chain C against C, TM-score 1.00
P08854 · AlphaFold monomer V2.0 prediction for molybdenum-pterin-binding protein 2 (P08854) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08854
Elsewhere: RCSB PDB 1GUS · PDBe 1GUS · UniProt P08854

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