MolNFT v1 · #82246 · protein

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from archaeoglobus fulgidus

3VGP · Transmembrane oligosaccharyl transferase, putative: “Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from archaeoglobus…”. X-ray diffraction, 1 pocket (best druggability 0.30). MolNFT v1…

PDB: 3VGP
Type: protein
Length: 163 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transmembrane oligosaccharyl transferase, putative
EC: 2.4.1.119
UniProt: O29918
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transmembrane oligosaccharyl transferase, putative (EC 2.4.1.119)	protein	163	44% helix, 12% strand	O29918

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.30	0.76	15	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3VGP · Crystal structure of the C-terminal globular domain of oligosaccharyltransferase… · the same entry in another collection · chain A against A, TM-score 1.00
O29918 · AlphaFold monomer V2.0 prediction for dolichyl- phosphooligosaccharide-protein… · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O29918
Elsewhere: RCSB PDB 3VGP · PDBe 3VGP · UniProt O29918

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