MolNFT v1 · #82110 · protein

Thaumatin by lb based hanging drop vapour diffusion after 18.1 mgy X- ray dose at esrf ID29 beamline (worst case)

3VCG · Thaumatin I: “Thaumatin by lb based hanging drop vapour diffusion after 18.1 mgy X- ray dose at esrf ID29 beamline (worst…”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #82110 on GenesisL1: 3D structure, binding…

PDB: 3VCG
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thaumatin I
UniProt: Q8RVT0
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thaumatin I	protein	207	12% helix, 39% strand	Q8RVT0

Ligands and binding sites

GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.56	0.90	20	GOL

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

3VCG · Thaumatin by LB based Hanging Drop Vapour Diffusion after 18.1 MGy X-Ray dose at ESRF… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8RVT0
Elsewhere: RCSB PDB 3VCG · PDBe 3VCG · UniProt Q8RVT0

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