MolNFT v1 · #82101 · protein
Crystal structure of enolase TBIS_1083(TARGET efi-502310) from thermobispora bispora dsm 43833 complexed with magnesium and formate
3VC6 · Mandelate RACEMASE/MUCONATE lactonizing protein: “Crystal structure of enolase TBIS_1083(TARGET efi-502310) from thermobispora bispora dsm 43833 complexed with…”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.75).…
- PDB
- 3VC6
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mandelate RACEMASE/MUCONATE lactonizing protein
- UniProt
- D6Y7Y6
- Ligands
- MG
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mandelate RACEMASE/MUCONATE lactonizing protein | protein | 420 | 39% helix, 20% strand | D6Y7Y6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.75 | 0.98 | 20 | empty |
| 2 | 103 | 0.44 | 0.78 | 18 | empty |
| 3 | 101 | 0.43 | 0.78 | 20 | empty |
Compared structures
- 3VC6 · Crystal structure of enolase Tbis_1083(TARGET EFI-502310) FROM Thermobispora bispora DSM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6Y7Y6
- Elsewhere: RCSB PDB 3VC6 · PDBe 3VC6 · UniProt D6Y7Y6
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