MolNFT v1 · #82100 · protein

Crystal structure of enolase TBIS_1083(TARGET efi-502310) from thermobispora bispora dsm 43833 complexed with phosphate

3VC5 · Mandelate RACEMASE/MUCONATE lactonizing protein: “Crystal structure of enolase TBIS_1083(TARGET efi-502310) from thermobispora bispora dsm 43833 complexed with…”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability…

PDB: 3VC5
Type: protein
Length: 419 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mandelate RACEMASE/MUCONATE lactonizing protein
UniProt: D6Y7Y6
Ligands: PO4
Pockets: 4 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mandelate RACEMASE/MUCONATE lactonizing protein	protein	419	39% helix, 19% strand	D6Y7Y6

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	89	0.76	0.98	20	empty
2	111	0.46	0.79	18	empty
3	98	0.42	0.77	18	empty
4	51	0.28	0.74	9	empty

Compared structures

3VC5 · Crystal structure of enolase Tbis_1083(TARGET EFI-502310) FROM Thermobispora bispora DSM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6Y7Y6
Elsewhere: RCSB PDB 3VC5 · PDBe 3VC5 · UniProt D6Y7Y6

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