MolNFT v1 · #81991 · protein

Structure of T82M glycogenin mutant truncated at residue 270

3V90 · Glycogenin-1: “Structure of T82M glycogenin mutant truncated at residue 270”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.49). MolNFT v1 #81991 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3V90
Type: protein
Length: 260 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycogenin-1
EC: 2.4.1.186
UniProt: P13280
Ligands: CL
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycogenin-1 (EC 2.4.1.186)	protein	260	44% helix, 18% strand	P13280

Ligands and binding sites

CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	195	0.49	0.76	26	empty

Compared structures

3V90 · Structure of T82M glycogenin mutant truncated at residue 270 · the same entry in another collection · chain A against A, TM-score 1.00
P13280 · AlphaFold monomer V2.0 prediction for glycogenin-1 (P13280) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13280
Elsewhere: RCSB PDB 3V90 · PDBe 3V90 · UniProt P13280

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