MolNFT v1 · #81932 · protein

DIP2269 protein from corynebacterium diphtheriae

3V7B · Uncharacterized protein: “DIP2269 protein from corynebacterium diphtheriae”. X-ray diffraction, 1 pocket (best druggability 0.73). MolNFT v1 #81932 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3V7B
Type: protein
Length: 289 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q6NEK4
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	147	27% helix, 29% strand	Q6NEK4
B	Uncharacterized protein	protein	142	26% helix, 30% strand	Q6NEK4

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	872	0.73	0.77	53	EDO

Interfaces

1 interface between chains.

A–B · 267 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified, 2 disulfide (engineered, disulfide).

Compared structures

3V7B · Dip2269 protein from corynebacterium diphtheriae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6NEK4
Elsewhere: RCSB PDB 3V7B · PDBe 3V7B · UniProt Q6NEK4

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