MolNFT v1 · #81929 · protein

Crystal structure of transcriptional regulator

3V78 · Probable transcriptional regulatory protein (probably deor…: “Crystal structure of transcriptional regulator”. X-ray diffraction, 1 ligand (ET), 3 pockets (best druggability 0.79). MolNFT v1 #81929 on GenesisL1: 3D structure…

PDB: 3V78
Type: protein
Length: 345 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable transcriptional regulatory protein (probably deor- family)
UniProt: P95092
Ligands: ET
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable transcriptional regulatory protein (probably deor- family)	protein	172	81% helix, 0% strand	P95092
B	Probable transcriptional regulatory protein (probably deor- family)	protein	173	82% helix, 0% strand	P95092

Ligands and binding sites

ET · Ethidium · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	116	0.79	0.97	22	ET
2	123	0.79	0.97	20	ET
3	190	0.64	0.84	29	empty

Interfaces

1 interface between chains.

A–B · 1679 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

3V78 · Crystal Structure of Transcriptional Regulator · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P95092
Elsewhere: RCSB PDB 3V78 · PDBe 3V78 · UniProt P95092

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