MolNFT v1 · #81882 · protein
Crystal structure of the unliganded form of GAL3P
3V5R · Protein GAL3: “Crystal structure of the unliganded form of GAL3P”. X-ray diffraction, 1 ligand (SO4), 16 pockets (best druggability 0.84). MolNFT v1 #81882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3V5R
- Type
- protein
- Length
- 996 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein GAL3
- UniProt
- P13045
- Ligands
- SO4
- Pockets
- 16 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein GAL3 | protein | 499 | 45% helix, 18% strand | P13045 |
| B | Protein GAL3 | protein | 497 | 44% helix, 18% strand | P13045 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 27 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.84 | 0.95 | 44 | empty |
| 2 | 795 | 0.82 | 0.85 | 81 | SO4 |
| 3 | 356 | 0.71 | 0.83 | 47 | SO4 |
| 4 | 411 | 0.70 | 0.82 | 44 | SO4 |
| 5 | 110 | 0.50 | 0.81 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 2005 Ų buried · 39 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13045
- Elsewhere: RCSB PDB 3V5R · PDBe 3V5R · UniProt P13045
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