MolNFT v1 · #81801 · protein
Crystal structure of chloroplast ATP synthase C-ring from pisum sativum
3V3C · ATP synthase subunit C, chloroplastic: “Crystal structure of chloroplast ATP synthase C-ring from pisum sativum”. X-ray diffraction, 3 ligands (DGD, NA, YT3). MolNFT v1 #81801 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3V3C
- Type
- protein
- Length
- 1,104 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase subunit C, chloroplastic
- UniProt
- P08212
- Ligands
- DGD, NA, YT3
Structure
x-ray diffraction · 2 distinct chains · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, G, H, I, J, K, L, M, N | ATP synthase subunit C, chloroplastic | protein | 79 | 89% helix, 0% strand | P08212 |
| F | ATP synthase subunit C, chloroplastic | protein | 77 | 91% helix, 0% strand | P08212 |
Ligands and binding sites
- DGD · Digalactosyl diacyl glycerol (dgdg) · ligand
- NA · Sodium ion · metal · 14 copies · chains A, B, N, L, M, K, J, I, H, G, F, E, D, C
- YT3 · Yttrium (III) ion · metal · 10 copies · chains A, N, F, H, K, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
14 interfaces between chains.
- D–E · 1788 Ų buried · 12 hydrogen bonds · protein-protein
- M–N · 1767 Ų buried · 9 hydrogen bonds · protein-protein
- K–L · 1756 Ų buried · 10 hydrogen bonds · protein-protein
- L–M · 1746 Ų buried · 9 hydrogen bonds · protein-protein
- A–N · 1741 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3V3C · Crystal Structure of Chloroplast ATP synthase c-ring from Pisum sativum · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08212
- Elsewhere: RCSB PDB 3V3C · PDBe 3V3C · UniProt P08212
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