MolNFT v1 · #8180 · DNA + RNA

Human immunodeficiency virus-1 okazaki fragment, DNA-RNA chimera, NMR, 11 structures

1GTC · DNA (5'-D(*GP*CP*AP*GP*TP*GP*GP*C)-3'): “Human immunodeficiency virus-1 okazaki fragment, DNA-RNA chimera, NMR, 11 structures”. Solution nmr. MolNFT v1 #8180 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GTC
Type: DNA + RNA
Length: 16 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*CP*AP*GP*TP*GP*GP*C)-3'); DNA/RNA (5'-R(*GP*CP*CP*A)-D(P*CP*TP*GP*C)-3')

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (5'-D(GPCPAPGPTPGPGPC)-3')	dna	8	—	—
B	DNA/RNA (5'-R(GPCPCPA)-D(PCPTPGPC)-3')	rna	8	—	—

Interfaces

1 interface between chains.

A–B · 371 Å² buried · 42 hydrogen bonds · nucleic-nucleic

Compared structures

1GTC · Human immunodeficiency virus-1 okazaki fragment, DNA-RNA chimera, NMR, 11 structures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1GTC · PDBe 1GTC

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