MolNFT v1 · #81786 · protein
Nitrite bound chlorin substituted myoglobin- method 1
3V2V: “Nitrite bound chlorin substituted myoglobin- method 1”. X-ray diffraction, 4 ligands (HKL, NA, NO2), 1 pocket (best druggability 0.76). MolNFT v1 #81786 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3V2V
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P68082
- Ligands
- HKL, NA, NO2, SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 152 | 77% helix, 0% strand | P68082 |
Ligands and binding sites
- HKL · Fe(III) pyropheophorbide-a methyl ester · ligand · chains A
- NA · Sodium ion · metal · chains A
- NO2 · Nitrite ion · ion · 3 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.76 | 0.88 | 28 | HKL, NO2 |
Compared structures
- 3V2V · Nitrite Bound Chlorin Substituted Myoglobin- Method 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68082
- Elsewhere: RCSB PDB 3V2V · PDBe 3V2V · UniProt P68082
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