MolNFT v1 · #8173 · protein
Complexe of bovine odorant binding protein with benzophenone
1GT5 · Odorant-binding protein: “Complexe of bovine odorant binding protein with benzophenone”. X-ray diffraction, 1 ligand (BZQ), 5 pockets (best druggability 0.83). MolNFT v1 #8173 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1GT5
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Odorant-binding protein
- UniProt
- P07435
- Ligands
- BZQ
- Pockets
- 5 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Odorant-binding protein | protein | 159 | 14% helix, 47% strand | P07435 |
| B | Odorant-binding protein | protein | 155 | 17% helix, 48% strand | P07435 |
Ligands and binding sites
- BZQ · Diphenylmethanone · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.83 | 0.99 | 20 | BZQ |
| 2 | 135 | 0.82 | 0.98 | 18 | BZQ |
| 3 | 230 | 0.74 | 0.88 | 35 | empty |
| 4 | 89 | 0.34 | 0.74 | 25 | empty |
| 5 | 67 | 0.30 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 2443 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07435
- Elsewhere: RCSB PDB 1GT5 · PDBe 1GT5 · UniProt P07435
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