MolNFT v1 · #81710 · protein
Crystal structure of rabbit serum albumin
3V09: “Crystal structure of rabbit serum albumin”. X-ray diffraction, 2 ligands (UNX, CL), 7 pockets (best druggability 0.78). MolNFT v1 #81710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3V09
- Type
- protein
- Length
- 583 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P49065
- Ligands
- UNX, CL
- Pockets
- 7 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 583 | 73% helix, 0% strand | P49065 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 22 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
- PG4 · Tetraethylene glycol · additive · 3 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 802 | 0.78 | 0.81 | 82 | UNX, EDO, CL |
| 2 | 790 | 0.76 | 0.80 | 58 | MES |
| 3 | 117 | 0.72 | 0.92 | 21 | MES |
| 4 | 204 | 0.56 | 0.79 | 22 | PG4 |
| 5 | 66 | 0.46 | 0.83 | 15 | PG4 |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49065
- Elsewhere: RCSB PDB 3V09 · PDBe 3V09 · UniProt P49065
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