MolNFT v1 · #81678 · protein
Crystal structure of a glycosylated ice-binding protein (leibp) from arctic yeast
3UYV · Antifreeze protein: “Crystal structure of a glycosylated ice-binding protein (leibp) from arctic yeast”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #81678 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3UYV
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Antifreeze protein
- UniProt
- C7F6X3
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antifreeze protein | protein | 231 | 16% helix, 40% strand | C7F6X3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 glycan (N-glycosylation).
Compared structures
- 3UYV · Crystal structure of a glycosylated ice-binding protein (LeIBP) from Arctic yeast · the same entry in another collection · chain A against A, TM-score 1.00
- C7F6X3 · AlphaFold monomer V2.0 prediction for ice-binding protein (C7F6X3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7F6X3
- Elsewhere: RCSB PDB 3UYV · PDBe 3UYV · UniProt C7F6X3
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