MolNFT v1 · #81610 · protein

Crystal structure of a probable peptide deformylase from strucynechococcus phage S-SSM7 in complex with actinonin

3UWB · Riia-riib membrane-associated protein: “Crystal structure of a probable peptide deformylase from strucynechococcus phage S-SSM7 in complex with…”. X-ray diffraction, 3 ligands (BB2, ZN, CL), 1 pocket (best druggability 0.48). MolNFT…

PDB: 3UWB
Type: protein
Length: 149 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Riia-riib membrane-associated protein
UniProt: E3SLL2
Ligands: BB2, ZN, CL
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Riia-riib membrane-associated protein	protein	149	28% helix, 37% strand	E3SLL2

Ligands and binding sites

BB2 · Actinonin · ligand · chains A
ZN · Zinc ion · metal · chains A
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.48	0.80	19	BB2

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3UWB · Crystal structure of a probable peptide deformylase from strucynechococcus phage S-SSM7… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E3SLL2
Elsewhere: RCSB PDB 3UWB · PDBe 3UWB · UniProt E3SLL2

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