MolNFT v1 · #81472 · protein
Re-refinement of pdb entry 5RNT - ribonuclease T1 with guanosine-3', 5'-diphosphate and phosphate ion bound
3URP · Guanyl-specific ribonuclease T1: “Re-refinement of pdb entry 5RNT - ribonuclease T1 with guanosine-3', 5'-diphosphate and phosphate ion bound”. X-ray diffraction, 3 ligands (PGP, PO4, UNX). MolNFT v1 #81472 on GenesisL1: 3D…
- PDB
- 3URP
- Type
- protein
- Length
- 103 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanyl-specific ribonuclease T1
- EC
- 3.1.27.3
- UniProt
- P00651
- Ligands
- PGP, PO4, UNX
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanyl-specific ribonuclease T1 (EC 3.1.27.3) | protein | 103 | 17% helix, 31% strand | P00651 |
Ligands and binding sites
- PGP · Guanosine-3',5'-diphosphate · ligand · chains A
- PO4 · Phosphate ion · ion · chains A
- UNX · Unknown atom or ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3URP · Re-refinement of PDB entry 5RNT - ribonuclease T1 with guanosine-3',5'-diphosphate and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00651
- Elsewhere: RCSB PDB 3URP · PDBe 3URP · UniProt P00651
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