MolNFT v1 · #81454 · protein
Higher-density crystal structure of potato endo-1,3-beta-glucanase
3UR7 · Glucan endo-1,3-beta-D-glucosidase: “Higher-density crystal structure of potato endo-1,3-beta-glucanase”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.75). MolNFT v1 #81454 on GenesisL1: 3D structure, binding…
- PDB
- 3UR7
- Type
- protein
- Length
- 632 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucan endo-1,3-beta-D-glucosidase
- EC
- 3.2.1.39
- UniProt
- Q70C53
- Ligands
- NA
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glucan endo-1,3-beta-D-glucosidase (EC 3.2.1.39) | protein | 316 | 40% helix, 17% strand | Q70C53 |
Ligands and binding sites
- NA · Sodium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 892 | 0.75 | 0.78 | 88 | empty |
| 2 | 618 | 0.66 | 0.76 | 56 | empty |
Interfaces
1 interface between chains.
- A–B · 358 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3UR7 · Higher-density crystal structure of potato endo-1,3-beta-glucanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70C53
- Elsewhere: RCSB PDB 3UR7 · PDBe 3UR7 · UniProt Q70C53
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