MolNFT v1 · #81358 · protein

Crystal structure of the MALT1 paracaspase (P1 form)

3UO8 · Mucosa-associated lymphoid tissue lymphoma translocation…: “Crystal structure of the MALT1 paracaspase (P1 form)”. X-ray diffraction, 10 pockets (best druggability 0.85). MolNFT v1 #81358 on GenesisL1: 3D structure, binding sites…

PDB: 3UO8
Type: protein
Length: 735 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mucosa-associated lymphoid tissue lymphoma translocation protein 1…
EC: 3.4.22.-
UniProt: Q9UDY8
Pockets: 10 · best druggability 0.85

Structure

x-ray diffraction · 3 distinct chains · 21% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (EC 3.4.22.-)	protein	364	22% helix, 30% strand	Q9UDY8
C	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (EC 3.4.22.-)	protein	363	21% helix, 29% strand	Q9UDY8
L, M	Z-val-arg-pro-dl-arg-fluoromethylketone	protein	4	0% helix, 50% strand	—

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	517	0.85	0.91	63	empty
2	119	0.56	0.83	25	empty
3	65	0.56	0.88	23	empty
4	214	0.52	0.76	35	empty
5	207	0.50	0.76	36	empty

Interfaces

3 interfaces between chains.

B–C · 1385 Å² buried · 12 hydrogen bonds · protein-protein
C–M · 540 Å² buried · 15 hydrogen bonds · protein-protein
B–L · 536 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

3UO8 · Crystal structure of the MALT1 paracaspase (P1 form) · the same entry in another collection · chain B against B, TM-score 1.00
Q9UDY8 · AlphaFold monomer V2.0 prediction for mucosa-associated lymphoid tissue lymphoma… · a predicted model of the same protein · chain C against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UDY8
Elsewhere: RCSB PDB 3UO8 · PDBe 3UO8 · UniProt Q9UDY8

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