MolNFT v1 · #81275 · protein

Crystal structure of an ice-binding protein from the perennial ryegrass, lolium perenne

3ULT · Ice recrystallization inhibition protein-like protein: “Crystal structure of an ice-binding protein from the perennial ryegrass, lolium perenne”. X-ray diffraction, 2 pockets (best druggability 0.54). MolNFT v1 #81275 on GenesisL1…

PDB: 3ULT
Type: protein
Length: 228 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ice recrystallization inhibition protein-like protein
UniProt: B5T007
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ice recrystallization inhibition protein-like protein	protein	114	0% helix, 54% strand	B5T007

Ligands and binding sites

EOH · Ethanol · additive · 11 copies · chains A, B
EDO · 1,2-ethanediol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	200	0.54	0.78	39	EOH, EDO
2	218	0.53	0.78	39	EDO, EOH

Interfaces

1 interface between chains.

A–B · 593 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

3ULT · Crystal structure of an ice-binding protein from the perennial ryegrass, Lolium perenne · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5T007
Elsewhere: RCSB PDB 3ULT · PDBe 3ULT · UniProt B5T007

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