MolNFT v1 · #81265 · protein
Crystal structure of apo LIN28B cold shock domain
3ULJ · LIN28B, DNA-binding protein: “Crystal structure of apo LIN28B cold shock domain”. X-ray diffraction, 1 pocket (best druggability 0.37). MolNFT v1 #81265 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3ULJ
- Type
- protein
- Length
- 177 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LIN28B, DNA-binding protein
- UniProt
- B4F6I0
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LIN28B, DNA-binding protein | protein | 87 | 7% helix, 57% strand | B4F6I0 |
| B | LIN28B, DNA-binding protein | protein | 90 | 7% helix, 56% strand | B4F6I0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.37 | 0.76 | 22 | GOL |
Interfaces
1 interface between chains.
- A–B · 452 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3ULJ · Crystal structure of apo Lin28B cold shock domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4F6I0
- Elsewhere: RCSB PDB 3ULJ · PDBe 3ULJ · UniProt B4F6I0
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