MolNFT v1 · #81139 · protein
Crystal structure of glutamate racemase from campylobacter jejuni subsp. jejuni
3UHP: “Crystal structure of glutamate racemase from campylobacter jejuni subsp. jejuni”. X-ray diffraction, 4 pockets (best druggability 0.79). MolNFT v1 #81139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3UHP
- Type
- protein
- Length
- 504 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate racemase
- EC
- 5.1.1.3
- UniProt
- Q9PM24
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate racemase (EC 5.1.1.3) | protein | 252 | 45% helix, 17% strand | Q9PM24 |
| B | Glutamate racemase (EC 5.1.1.3) | protein | 252 | 47% helix, 17% strand | Q9PM24 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1095 | 0.79 | 0.80 | 88 | empty |
| 2 | 66 | 0.31 | 0.74 | 19 | empty |
| 3 | 60 | 0.29 | 0.74 | 15 | empty |
| 4 | 51 | 0.28 | 0.75 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 724 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 3UHP · Crystal Structure of Glutamate Racemase from Campylobacter jejuni subsp. jejuni · the same entry in another collection · chain A against A, TM-score 1.00
- Q9PM24 · AlphaFold monomer V2.0 prediction for glutamate racemase (Q9PM24) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PM24
- Elsewhere: RCSB PDB 3UHP · PDBe 3UHP · UniProt Q9PM24
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