MolNFT v1 · #81126 · protein

Hbi (N79A) co bound

3UHC · Globin-1: “Hbi (N79A) co bound”. X-ray diffraction, 2 ligands (HEM, CMO), 1 pocket (best druggability 0.86). MolNFT v1 #81126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3UHC
Type: protein
Length: 290 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Globin-1
UniProt: P02213
Ligands: HEM, CMO
Pockets: 1 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 80% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Globin-1	protein	145	80% helix, 0% strand	P02213

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
CMO · Carbon monoxide · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	911	0.86	0.87	67	HEM, CMO

Interfaces

1 interface between chains.

A–B · 946 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

3UHC · HBI (N79A) CO bound · the same entry in another collection · chain A against A, TM-score 1.00
P02213 · AlphaFold monomer V2.0 prediction for globin-1 (P02213) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02213
Elsewhere: RCSB PDB 3UHC · PDBe 3UHC · UniProt P02213

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