MolNFT v1 · #81056 · protein
Crystal structure of a modification subunit of a putative type I restriction enzyme from vibrio vulnificus YJ016
3UFB · Type I restriction-modification system methyltransferase…: “Crystal structure of a modification subunit of a putative type I restriction enzyme from vibrio vulnificus…”. X-ray diffraction, 7 pockets (best druggability 0.73). MolNFT…
- PDB
- 3UFB
- Type
- protein
- Length
- 484 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type I restriction-modification system methyltransferase subunit
- EC
- 2.1.1.72
- UniProt
- Q7MPU6
- Pockets
- 7 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type I restriction-modification system methyltransferase subunit (EC 2.1.1.72) | protein | 484 | 43% helix, 13% strand | Q7MPU6 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.73 | 0.98 | 12 | empty |
| 2 | 242 | 0.66 | 0.83 | 44 | empty |
| 3 | 368 | 0.62 | 0.78 | 40 | empty |
| 4 | 155 | 0.49 | 0.78 | 19 | empty |
| 5 | 111 | 0.48 | 0.79 | 19 | empty |
Compared structures
- 3UFB · Crystal structure of a modification subunit of a putative type I restriction enzyme from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7MPU6
- Elsewhere: RCSB PDB 3UFB · PDBe 3UFB · UniProt Q7MPU6
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